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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
489
ATAC-seq
212
DNase-seq
62
snATAC-seq
5
FAIRE-seq
Assay category
1831
DNA binding
1794
Transcription
768
DNA accessibility
56
DNA methylation
34
3D chromatin structure
1
DNA sequencing
Date released
187
June, 2019
102
February, 2023
100
May, 2020
82
August, 2021
49
February, 2021
38
May, 2022
34
May, 2021
33
October, 2019
26
November, 2019
16
January, 2021
14
September, 2018
11
August, 2017
11
May, 2023
10
April, 2020
10
November, 2018
8
July, 2019
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
1
August, 2022
Available data
492
bed narrowPeak
389
bam
350
bigWig
241
bigBed narrowPeak
209
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
102
fastq
64
xls
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
txt
1
tar
Organism
767
Homo sapiens
Biosample type
469
tissue
228
primary cell
40
in vitro differentiated cells
31
cell line
Organ
163
kidney
134
pancreas
84
epithelium
77
heart
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
34
connective tissue
34
musculature of body
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
692
AMP
37
HPAP
29
T1D
10
LungMap
Genome assembly (visualization)
449
hg19
441
GRCh38
Lab
561
AMP-T2D consortium
81
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
37
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
2
Mark McCarthy, Oxford
2
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
45
inconsistent ontology term
28
audit script error
1
inconsistent replicate
files.file_type!
txt
zippedFastqFolder
BIOSAMPLE
ASSAY
768 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
islet of Langerhans
68
1
7
1
coronary artery
36
2
liver
20
2
heart
18
+ See 60 more…
primary cell
Langerhans cell
27
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
pancreatic alpha cell
13
+ See 58 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
embryonic stem cell
5
+ See 5 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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