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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ATAC-seq
106
ChIP-seq
Assay category
129
DNA accessibility
106
DNA binding
Target of assay
90
histone
90
histone modification
53
broad histone mark
37
narrow histone mark
16
transcription factor
6
RNA binding protein
Date released
80
August, 2021
63
February, 2023
40
May, 2024
30
May, 2021
20
August, 2017
May, 2022
1
April, 2019
1
November, 2017
Available data
bam
3149
bigWig
1779
bed narrowPeak
1600
tsv
1334
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
272
bed bed3+
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
19
zippedFastqFolder
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
235
Homo sapiens
Biosample type
189
tissue
30
primary cell
14
cell line
2
in vitro differentiated cells
Organ
76
heart
64
kidney
35
artery
35
blood vessel
35
vasculature
27
eye
14
liver
13
musculature of body
12
epithelium
6
pancreas
4
connective tissue
2
adipose tissue
1
brain
Project
235
AMP
Genome assembly (visualization)
139
GRCh38
96
hg19
Lab
85
AMP-T2D consortium
64
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
30
Kyle Gaulton, UCSD
14
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
files.file_type!
txt
bam
month_released!
May, 2022
BIOSAMPLE
ASSAY
235 results
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Clear Filters
ATAC-seq
ChIP-seq
tissue
kidney
64
left cardiac atrium
40
coronary artery
35
retina
15
skeletal muscle tissue
13
+ See 6 more…
primary cell
CD8-positive, alpha-beta T cell
30
cell line
HepG2
14
in vitro differentiated cells
adipocyte
1
osteoblast
1
See all biosamples
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