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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
49
ChIP-seq
Assay category
197
DNA accessibility
49
DNA binding
Target of assay
49
transcription factor
30
histone
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
181
June, 2019
47
November, 2017
8
November, 2018
7
October, 2019
3
August, 2017
Available data
2048
bam
1765
bigWig
1122
tsv
1053
fastq
926
bed narrowPeak
632
bigBed narrowPeak
248
bed broadPeak
246
bigBed broadPeak
221
bed bed3+
txt
153
zippedFastqFolder
74
tagAlign
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
vcf
Organism
246
Homo sapiens
Biosample type
174
tissue
45
cell line
27
primary cell
Organ
78
kidney
49
liver
36
limb
35
brain
33
musculature of body
30
heart
18
epithelium
18
ureter
13
vasculature
10
blood vessel
connective tissue
7
pancreas
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
246
AMP
Genome assembly (visualization)
232
GRCh38
224
hg19
Lab
246
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
2
inconsistent control read length
files.file_type!
txt
organ_slims!
connective tissue
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
246 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 38 more…
cell line
HepG2
44
Panc1
1
primary cell
skeletal muscle myoblast
1
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
endothelial cell of umbilical vein
2
+ See 14 more…
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