Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
total RNA-seq
20
ChIP-seq
5
pCHi-C
1
ATAC-seq
Assay category
113
Transcription
20
DNA binding
1
DNA accessibility
Target of assay
11
histone
11
histone modification
6
broad histone mark
5
narrow histone mark
5
transcription factor
4
control
Date released
86
February, 2021
17
August, 2021
12
November, 2017
9
March, 2020
5
January, 2019
4
May, 2021
4
October, 2019
1
May, 2020
1
November, 2019
Available data
582
bam
522
bigWig
427
fastq
404
bed narrowPeak
355
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
txt
1
vcf
Organism
139
Homo sapiens
Biosample type
1309
tissue
370
primary cell
171
in vitro differentiated cells
139
cell line
4
stem cell
Organ
58
artery
58
blood vessel
58
heart
58
vasculature
35
epithelium
34
pancreas
27
liver
8
embryo
6
kidney
1
mammary gland
Project
137
AMP
2
T1D
Genome assembly (visualization)
122
hg19
118
GRCh38
Lab
130
AMP-T2D consortium
9
Bing Ren, UCSD
Audit category:
39
inconsistent ontology term
Audit category:
11
inconsistent control read length
files.file_type!
txt
BIOSAMPLE
ASSAY
139 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
pCHi-C
ATAC-seq
cell line
smooth muscle cell of the coronary artery
52
6
EndoC_BH1
33
1
HepG2
14
12
1
H1-hESC
8
RCC 7860 vector
1
1
+ See 8 more…
See all biosamples
Download