Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
971
total RNA-seq
280
ChIP-seq
196
ATAC-seq
178
DNase-seq
69
single cell RNA-seq
27
WGBS
25
pCHi-C
21
snATAC-seq
16
small RNA-seq
14
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
2
RNA microarray
Assay category
1056
Transcription
399
DNA accessibility
280
DNA binding
38
DNA methylation
14
3D chromatin structure
Target of assay
628
histone modification
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
456
February, 2021
August, 2021
166
May, 2020
163
June, 2019
161
August, 2017
120
July, 2018
91
February, 2023
77
July, 2019
74
October, 2019
59
May, 2022
47
September, 2023
44
October, 2018
43
December, 2017
40
May, 2021
40
November, 2019
38
March, 2020
26
May, 2019
26
November, 2018
25
February, 2020
20
April, 2019
19
April, 2020
15
May, 2023
12
November, 2017
11
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
Available data
1442
bam
1251
bigWig
977
tsv
401
bed narrowPeak
304
fastq
249
bigBed narrowPeak
193
bed bed3+
178
bed broadPeak
176
bigBed broadPeak
txt
52
tagAlign
25
bed bedMethyl
25
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
Organism
1819
Homo sapiens
Biosample type
1821
tissue
842
primary cell
522
cell line
251
in vitro differentiated cells
8
stem cell
Organ
513
connective tissue
455
adipose tissue
424
pancreas
292
liver
146
kidney
126
heart
81
brain
73
blood vessel
73
limb
73
vasculature
70
bone element
56
musculature of body
54
eye
51
artery
20
lung
19
nerve
19
spleen
18
ureter
15
epithelium
12
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1726
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1316
hg19
1302
GRCh38
Lab
1640
AMP-T2D consortium
47
KPMP
46
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
14
Katalin Susztak, Upenn
5
Patrick T. Ellinor, Broad
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
5
inconsistent ontology term
3
audit script error
Audit category:
18
missing controlled_by
files.file_type!
txt
month_released!
August, 2021
target.investigated_as!
histone
organ_slims!
blood
BIOSAMPLE
ASSAY
1821 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
WGBS
pCHi-C
snATAC-seq
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
RNA microarray
tissue
islet of Langerhans
285
20
68
1
6
4
7
2
1
1
4
adipose tissue
382
1
3
3
1
liver
167
81
20
2
1
3
1
1
1
1
kidney
7
11
13
51
1
1
bone tissue
58
+ See 111 more…
See all biosamples
Download