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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
402
ChIP-seq
Assay category
402
DNA binding
Target of assay
240
transcription factor
88
histone
88
histone modification
71
control
66
recombinant protein
50
broad histone mark
38
narrow histone mark
35
RNA binding protein
11
chromatin remodeller
2
other context
2
other post-translational modification
Date released
626
February, 2021
410
August, 2017
402
November, 2017
399
May, 2021
341
May, 2020
314
October, 2019
262
August, 2021
218
June, 2019
198
February, 2023
193
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
84
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
3
June, 2018
3
October, 2022
August, 2022
Available data
388
bam
330
bigWig
320
fastq
309
bed narrowPeak
308
bigBed narrowPeak
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
Organism
402
Homo sapiens
Biosample type
311
cell line
82
tissue
9
primary cell
Organ
311
liver
91
brain
6
epithelium
6
vasculature
3
blood vessel
Project
402
AMP
Genome assembly (visualization)
278
GRCh38
277
hg19
Lab
402
AMP-T2D consortium
Audit category:
6
missing controlled_by
Audit category:
21
inconsistent control read length
inconsistent control run_type
files.file_type!
txt
month_released!
August, 2022
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
402 results
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Clear Filters
ChIP-seq
cell line
HepG2
311
tissue
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
middle frontal area 46
14
+ See 1 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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