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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
4
RRBS
2
Hi-C
2
total RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
39
DNA binding
34
DNA accessibility
4
DNA methylation
3
Transcription
2
3D chromatin structure
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
July, 2019
7
May, 2019
5
March, 2020
February, 2020
1
January, 2018
1
May, 2022
Available data
63
bigWig
60
bed narrowPeak
52
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
3
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hic
txt
Organism
83
Homo sapiens
Biosample type
72
tissue
11
primary cell
Organ
933
pancreas
780
liver
664
connective tissue
511
epithelium
477
adipose tissue
365
heart
281
kidney
256
brain
221
vasculature
216
blood vessel
136
artery
114
limb
83
musculature of body
71
bone element
69
blood
69
bodily fluid
59
eye
42
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
83
AMP
Genome assembly (visualization)
67
hg19
48
GRCh38
Lab
83
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
files.file_type!
txt
month_released!
February, 2020
July, 2019
BIOSAMPLE
ASSAY
83 results
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ChIP-seq
DNase-seq
RRBS
Hi-C
total RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
4
1
1
muscle of leg
7
13
muscle of arm
17
psoas muscle
2
2
1
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
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