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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
5
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
12
Transcription
5
DNA accessibility
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
28
May, 2019
16
October, 2017
15
July, 2019
February, 2020
2
March, 2020
1
February, 2023
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
bed bed3+
21
fastq
14
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
239
Homo sapiens
Biosample type
226
tissue
13
primary cell
Organ
910
pancreas
777
liver
655
connective tissue
503
epithelium
483
adipose tissue
360
heart
239
brain
220
vasculature
216
blood vessel
214
kidney
135
artery
83
limb
71
bone element
69
blood
69
bodily fluid
60
musculature of body
56
eye
40
nerve
34
embryo
24
spleen
20
lung
20
vein
12
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
239
AMP
Genome assembly (visualization)
185
GRCh38
139
hg19
Lab
239
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
txt
bed bed3+
month_released!
February, 2020
BIOSAMPLE
ASSAY
239 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
1
1
1
layer of hippocampus
23
temporal lobe
15
1
1
substantia nigra
16
angular gyrus
15
+ See 70 more…
primary cell
choroid plexus epithelial cell
3
1
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
cerebellar granule cell
2
Purkinje cell
1
See all biosamples
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