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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
109
total RNA-seq
18
snATAC-seq
17
pCHi-C
16
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
DNA binding
109
Transcription
34
DNA accessibility
Date released
81
May, 2021
45
May, 2020
23
February, 2023
May, 2022
16
January, 2021
Available data
103
bigWig
96
bam
96
tsv
2
bed bed3+
Organism
165
Homo sapiens
Biosample type
122
primary cell
28
tissue
10
in vitro differentiated cells
5
cell line
Organ
27
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
152
T1D
13
AMP
Genome assembly (visualization)
103
hg19
96
GRCh38
Lab
2157
AMP-T2D consortium
190
Klaus Kaestner, Upenn
165
Kyle Gaulton, UCSD
85
Katalin Susztak, Upenn
47
KPMP
20
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
4
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
files.file_type!
txt
month_released!
May, 2022
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
165 results
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total RNA-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
53
1
peripheral blood mononuclear cell
8
CD8-positive, alpha-beta T cell
4
1
B cell
2
1
naive B cel
2
1
+ See 31 more…
tissue
islet of Langerhans
5
6
11
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
5
cell line
EndoC_BH1
3
2
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