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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
44
total RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
80
DNA binding
65
Transcription
27
DNA methylation
8
3D chromatin structure
2
DNA accessibility
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
17
control
6
transcription factor
4
RNA binding protein
Date released
604
February, 2021
406
August, 2017
406
November, 2017
365
May, 2021
292
October, 2019
241
May, 2020
218
June, 2019
186
August, 2021
168
July, 2018
120
May, 2019
116
May, 2022
102
July, 2019
98
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
3
June, 2018
3
October, 2022
1
August, 2022
1
March, 2019
Available data
155
bam
144
bigWig
67
bed narrowPeak
66
bigBed narrowPeak
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
4
bed bed3+
4
hdf5
Organism
182
Homo sapiens
Biosample type
151
tissue
31
primary cell
Organ
78
heart
34
kidney
18
connective tissue
17
brain
13
epithelium
12
adipose tissue
10
liver
10
musculature of body
10
vasculature
9
blood vessel
6
pancreas
5
limb
2
artery
2
pericardium
1
eye
Project
182
AMP
Genome assembly (visualization)
151
hg19
137
GRCh38
Lab
182
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
txt
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
182 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
35
2
1
4
kidney
23
1
1
heart right ventricle
13
2
heart
9
2
1
1
omental fat pad
4
1
+ See 24 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
renal cortical epithelial cell
1
1
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