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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
Assay category
150
DNA binding
10
DNA accessibility
7
DNA methylation
Transcription
Target of assay
70
transcription factor
60
histone
60
histone modification
37
broad histone mark
25
RNA binding protein
23
narrow histone mark
20
control
16
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
406
November, 2017
322
August, 2017
284
October, 2019
218
June, 2019
217
May, 2021
151
May, 2020
139
August, 2021
139
May, 2022
120
May, 2019
108
February, 2023
94
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
68
February, 2021
49
March, 2020
46
September, 2018
43
July, 2019
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
3
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
166
bam
145
bigWig
138
bed narrowPeak
137
bigBed narrowPeak
87
fastq
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
Organism
167
Homo sapiens
Biosample type
106
tissue
61
cell line
Organ
57
heart
53
liver
23
kidney
15
blood
15
bodily fluid
9
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
167
AMP
Genome assembly (visualization)
143
GRCh38
136
hg19
Lab
167
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
txt
assay_slims!
Transcription
BIOSAMPLE
ASSAY
167 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
tissue
heart left ventricle
35
kidney
23
heart right ventricle
13
heart
9
spleen
6
1
2
+ See 6 more…
cell line
HepG2
45
1
GM12878
15
See all biosamples
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