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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
150
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
150
DNA binding
11
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
70
transcription factor
60
histone
60
histone modification
37
broad histone mark
25
RNA binding protein
23
narrow histone mark
20
control
16
recombinant protein
7
chromatin remodeller
3
other context
3
other post-translational modification
Date released
626
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
314
October, 2019
262
August, 2021
218
June, 2019
198
February, 2023
193
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
3
June, 2018
3
October, 2022
1
August, 2022
Available data
166
bam
145
bigWig
138
bed narrowPeak
137
bigBed narrowPeak
88
fastq
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
169
Homo sapiens
Biosample type
107
tissue
61
cell line
1
primary cell
Organ
57
heart
53
liver
23
kidney
15
blood
15
bodily fluid
9
spleen
8
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
169
AMP
Genome assembly (visualization)
143
GRCh38
136
hg19
Lab
169
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
txt
BIOSAMPLE
ASSAY
169 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
snATAC-seq
tissue
heart left ventricle
35
kidney
23
heart right ventricle
13
heart
9
spleen
6
1
2
+ See 7 more…
cell line
HepG2
45
1
GM12878
15
primary cell
pancreatic cell
1
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