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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
419
ChIP-seq
ATAC-seq
20
total RNA-seq
2
Hi-C
Assay category
419
DNA binding
20
Transcription
2
3D chromatin structure
Target of assay
245
transcription factor
98
histone
98
histone modification
73
control
66
recombinant protein
56
broad histone mark
42
narrow histone mark
38
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
604
February, 2021
406
August, 2017
406
November, 2017
365
May, 2021
292
October, 2019
241
May, 2020
218
June, 2019
186
August, 2021
168
July, 2018
120
May, 2019
116
May, 2022
102
July, 2019
98
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
3
June, 2018
3
October, 2022
1
August, 2022
1
March, 2019
Available data
425
bam
365
bigWig
324
bed narrowPeak
324
fastq
312
bigBed narrowPeak
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
20
tsv
3
tar
2
bedpe bed3+
2
hic
Organism
441
Homo sapiens
Biosample type
330
cell line
102
tissue
9
primary cell
Organ
315
liver
91
brain
35
pancreas
21
epithelium
6
vasculature
3
blood vessel
Project
441
AMP
Genome assembly (visualization)
314
hg19
311
GRCh38
Lab
441
AMP-T2D consortium
Audit category:
15
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
files.file_type!
txt
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
441 results
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Clear Filters
ChIP-seq
total RNA-seq
Hi-C
cell line
HepG2
315
EndoC_BH1
13
1
1
tissue
layer of hippocampus
22
islet of Langerhans
19
1
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
+ See 2 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
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