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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
single cell RNA-seq
36
total RNA-seq
29
ATAC-seq
13
ChIP-seq
2
Hi-C
Assay category
76
Transcription
29
DNA accessibility
13
DNA binding
2
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
626
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
314
October, 2019
262
August, 2021
218
June, 2019
198
February, 2023
193
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
3
June, 2018
3
October, 2022
1
August, 2022
Available data
59
bam
41
fastq
37
bed narrowPeak
34
bigWig
20
tsv
19
zippedFastqFolder
2
bedpe bed3+
2
hic
Organism
120
Homo sapiens
Biosample type
59
primary cell
40
tissue
16
cell line
5
in vitro differentiated cells
Organ
74
pancreas
35
epithelium
1
adipose tissue
1
connective tissue
Project
61
AMP
59
HPAP
Genome assembly (visualization)
60
GRCh38
59
hg19
Lab
61
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
22
inconsistent ontology term
files.file_type!
txt
BIOSAMPLE
ASSAY
120 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
pancreatic beta cell
1
1
tissue
islet of Langerhans
19
19
1
adipose tissue(adipose white tissue)
1
cell line
EndoC_BH1
1
1
13
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
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