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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
7
DNase-seq
5
Hi-C
2
ATAC-seq
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
88
DNA binding
Transcription
10
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Target of assay
68
histone
68
histone modification
45
broad histone mark
23
narrow histone mark
17
control
3
RNA binding protein
3
transcription factor
Date released
47
October, 2019
45
May, 2019
5
July, 2019
3
June, 2019
3
March, 2020
3
November, 2017
Available data
100
bam
82
bigWig
76
bed narrowPeak
74
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
9
bed bed3+
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
1
tsv
Organism
106
Homo sapiens
Biosample type
77
tissue
29
primary cell
Organ
598
liver
467
pancreas
323
epithelium
262
brain
229
kidney
heart
203
connective tissue
169
vasculature
163
blood vessel
115
limb
90
adipose tissue
86
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
13
bone element
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
106
AMP
Genome assembly (visualization)
83
hg19
76
GRCh38
Lab
106
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
txt
organ_slims!
heart
assay_slims!
Transcription
BIOSAMPLE
ASSAY
106 results
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ChIP-seq
DNase-seq
Hi-C
ATAC-seq
WGBS
FAIRE-seq
pCHi-C
tissue
tibial artery
23
2
1
aorta
13
1
2
1
ascending aorta
16
1
thoracic aorta
16
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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