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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
33
DNase-seq
8
snATAC-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
ATAC-seq
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
99
DNA binding
43
DNA accessibility
9
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
51
transcription factor
34
histone
34
histone modification
20
broad histone mark
14
narrow histone mark
12
control
10
RNA binding protein
10
chromatin remodeller
Date released
43
June, 2019
27
December, 2018
26
August, 2017
18
January, 2019
15
November, 2018
10
July, 2019
8
January, 2021
7
May, 2019
5
March, 2020
2
February, 2020
2
January, 2018
1
May, 2022
Available data
123
bigWig
117
bam
114
bed narrowPeak
101
bigBed narrowPeak
62
fastq
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
hic
txt
Organism
164
Homo sapiens
Biosample type
81
tissue
61
cell line
22
primary cell
Organ
940
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
353
heart
292
kidney
286
brain
236
vasculature
230
blood vessel
141
artery
122
limb
95
musculature of body
71
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
156
AMP
8
T1D
Genome assembly (visualization)
127
hg19
107
GRCh38
Lab
156
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
1
inconsistent control
files.file_type!
txt
BIOSAMPLE
ASSAY
164 results
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ChIP-seq
DNase-seq
snATAC-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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cell line
GM12878
60
1
primary cell
skeletal muscle satellite cell
8
1
1
peripheral blood mononuclear cell
8
skeletal muscle cell
2
1
1
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