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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
total RNA-seq
57
ATAC-seq
34
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
116
Transcription
61
DNA accessibility
34
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
132
February, 2021
39
February, 2023
26
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
May, 2021
Available data
168
bam
143
bigWig
116
tsv
txt
82
bed narrowPeak
25
bigBed narrowPeak
6
tagAlign
4
bed bed3
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
212
Homo sapiens
Biosample type
143
tissue
66
cell line
3
primary cell
Organ
940
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
292
kidney
286
brain
236
vasculature
230
blood vessel
141
artery
122
limb
95
musculature of body
71
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
211
AMP
1
T1D
Genome assembly (visualization)
194
GRCh38
163
hg19
Lab
211
AMP-T2D consortium
1
Kyle Gaulton, UCSD
files.file_type!
txt
BIOSAMPLE
ASSAY
212 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
pCHi-C
tissue
bone tissue
58
coronary artery
1
36
5
2
tibial artery
1
1
23
2
pulmonary artery
2
acetabular part of hip bone
1
+ See 11 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
megakaryocyte
1
smooth muscle cell of the coronary artery
1
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