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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ChIP-seq
3
DNase-seq
2
Hi-C
1
FAIRE-seq
1
RRBS
1
small RNA-seq
1
total RNA-seq
Assay category
27
DNA binding
4
DNA accessibility
2
3D chromatin structure
2
Transcription
1
DNA methylation
Target of assay
23
histone
23
histone modification
13
broad histone mark
10
narrow histone mark
4
control
Date released
21
October, 2019
11
June, 2019
3
July, 2019
1
March, 2020
Available data
33
bam
26
bigWig
22
bed narrowPeak
22
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
3
bed bed3+
2
hic
2
tsv
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
36
Homo sapiens
Biosample type
81
tissue
36
primary cell
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
36
AMP
Genome assembly (visualization)
29
hg19
23
GRCh38
Lab
36
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
files.file_type!
txt
BIOSAMPLE
ASSAY
36 results
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ChIP-seq
DNase-seq
Hi-C
FAIRE-seq
RRBS
small RNA-seq
total RNA-seq
primary cell
endothelial cell of umbilical vein
17
2
2
1
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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