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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
12
ATAC-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
Assay category
15
DNA accessibility
15
DNA binding
2
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
control
Date released
19
October, 2019
8
February, 2021
4
February, 2023
1
March, 2020
Available data
26
bam
21
bed narrowPeak
15
bigWig
13
bigBed narrowPeak
4
bed bed3
4
bed broadPeak
4
bigBed broadPeak
txt
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
32
Homo sapiens
Biosample type
20
primary cell
12
tissue
Organ
887
pancreas
683
liver
649
connective tissue
494
epithelium
467
adipose tissue
373
heart
280
kidney
255
brain
214
vasculature
209
blood vessel
132
artery
105
limb
89
musculature of body
71
bone element
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
12
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
32
AMP
Genome assembly (visualization)
29
hg19
20
GRCh38
Lab
32
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
txt
target.investigated_as!
control
BIOSAMPLE
ASSAY
32 results
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ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
primary cell
endothelial cell of umbilical vein
15
2
2
1
tissue
acetabular part of hip bone
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
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