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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
38
ChIP-seq
DNase-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
58
Transcription
45
DNA accessibility
38
DNA binding
Target of assay
24
histone
24
histone modification
14
broad histone mark
10
narrow histone mark
9
control
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
28
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
1
March, 2020
Available data
98
bam
81
bigWig
70
bed narrowPeak
59
tsv
21
bigBed narrowPeak
6
tagAlign
Organism
142
Homo sapiens
Biosample type
74
tissue
66
cell line
2
primary cell
Organ
938
pancreas
784
liver
675
connective tissue
505
epithelium
489
adipose tissue
363
heart
273
kidney
254
brain
225
vasculature
221
blood vessel
159
bone element
137
artery
86
limb
69
blood
69
bodily fluid
63
musculature of body
57
eye
41
nerve
37
embryo
24
spleen
20
lung
20
vein
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
142
AMP
Genome assembly (visualization)
124
GRCh38
89
hg19
Lab
142
AMP-T2D consortium
files.file_type!
vcf
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
142 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
pCHi-C
tissue
coronary artery
1
36
5
tibial artery
1
1
23
islet of Langerhans
4
pulmonary artery
2
ovary
1
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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