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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
29
ATAC-seq
19
total RNA-seq
8
snATAC-seq
4
DNase-seq
pCHi-C
1
RRBS
Assay category
65
DNA binding
41
DNA accessibility
19
Transcription
1
DNA methylation
Target of assay
52
transcription factor
11
RNA binding protein
10
chromatin remodeller
7
control
4
histone
4
histone modification
4
narrow histone mark
Date released
31
February, 2023
27
December, 2018
18
January, 2019
17
October, 2019
15
November, 2018
8
January, 2021
7
June, 2019
1
February, 2020
1
January, 2018
1
July, 2019
Available data
87
bed narrowPeak
67
bam
61
bigWig
60
bigBed narrowPeak
60
fastq
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
126
Homo sapiens
Biosample type
61
cell line
52
tissue
13
primary cell
Organ
945
pancreas
787
liver
679
connective tissue
524
epithelium
489
adipose tissue
390
heart
352
kidney
284
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
118
AMP
8
T1D
Genome assembly (visualization)
89
hg19
60
GRCh38
Lab
118
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
files.file_type!
vcf
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
126 results
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ChIP-seq
ATAC-seq
total RNA-seq
snATAC-seq
DNase-seq
RRBS
cell line
GM12878
60
1
tissue
retina
15
3
3
islet of Langerhans
2
1
14
pigmented layer of retina
12
2
primary cell
peripheral blood mononuclear cell
8
retinal pigment epithelial cell
3
1
1
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