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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
22
ChIP-seq
19
total RNA-seq
6
DNase-seq
pCHi-C
2
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
35
DNA accessibility
22
DNA binding
19
Transcription
2
3D chromatin structure
1
DNA methylation
Target of assay
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
38
October, 2019
31
February, 2023
7
June, 2019
1
February, 2020
1
July, 2019
1
March, 2020
Available data
46
bed narrowPeak
27
bam
21
bigWig
19
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
5
tsv
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
79
Homo sapiens
Biosample type
52
tissue
27
primary cell
Organ
945
pancreas
787
liver
679
connective tissue
524
epithelium
489
adipose tissue
390
heart
352
kidney
284
brain
235
vasculature
229
blood vessel
158
bone element
141
artery
122
limb
95
musculature of body
69
blood
69
bodily fluid
57
eye
43
nerve
37
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
79
AMP
Genome assembly (visualization)
51
hg19
18
GRCh38
Lab
79
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
vcf
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
79 results
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ATAC-seq
ChIP-seq
total RNA-seq
DNase-seq
Hi-C
FAIRE-seq
RRBS
tissue
retina
15
3
3
islet of Langerhans
1
2
14
pigmented layer of retina
12
2
primary cell
endothelial cell of umbilical vein
17
2
2
1
retinal pigment epithelial cell
3
1
1
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