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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
10
total RNA-seq
3
Hi-C
3
STARR-seq
1
ATAC-seq
Assay category
18
DNA binding
10
Transcription
3
3D chromatin structure
1
DNA accessibility
Target of assay
11
transcription factor
4
control
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
33
August, 2021
2
March, 2019
Available data
14
bed narrowPeak
14
bigWig
10
tsv
2
bedpe bed3+
2
hic
1
bedpe
vcf
Organism
35
Homo sapiens
Biosample type
31
cell line
4
tissue
Organ
30
liver
4
pancreas
kidney
Project
35
AMP
Genome assembly (visualization)
17
hg19
1
GRCh38
Lab
3747
AMP-T2D consortium
325
Kyle Gaulton, UCSD
276
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
35
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
9
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
files.file_type!
vcf
assay_title!
snATAC-seq
organ_slims!
kidney
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
total RNA-seq
Hi-C
STARR-seq
ATAC-seq
cell line
HepG2
18
9
1
2
Synthesized DNA
1
tissue
islet of Langerhans
1
2
1
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