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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
712
ChIP-seq
168
DNase-seq
64
ATAC-seq
16
small RNA-seq
11
WGBS
6
single cell RNA-seq
3
FAIRE-seq
Assay category
712
DNA binding
235
DNA accessibility
22
Transcription
11
DNA methylation
Target of assay
466
histone modification
465
histone
243
narrow histone mark
222
broad histone mark
164
control
82
transcription factor
23
RNA binding protein
2
chromatin remodeller
Date released
178
October, 2019
163
June, 2019
115
May, 2019
81
August, 2017
79
April, 2019
74
October, 2018
69
November, 2017
50
May, 2020
48
December, 2017
33
July, 2019
November, 2018
20
November, 2019
18
May, 2022
15
October, 2017
8
February, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
2
March, 2020
1
March, 2019
Available data
980
bam
967
bed narrowPeak
854
bigWig
544
bigBed narrowPeak
254
fastq
238
tagAlign
204
bed broadPeak
196
bed bed3+
167
bigBed broadPeak
151
tsv
98
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
973
Homo sapiens
Biosample type
980
tissue
459
primary cell
417
cell line
164
in vitro differentiated cells
3
stem cell
Organ
219
brain
153
pancreas
132
liver
120
heart
110
limb
97
kidney
83
blood vessel
83
vasculature
45
adipose tissue
45
connective tissue
41
musculature of body
38
nerve
34
artery
18
ureter
15
spleen
8
bone element
8
skeleton
3
eye
1
pituitary gland
Project
978
AMP
2
T1D
Genome assembly (visualization)
786
GRCh38
736
hg19
Lab
961
AMP-T2D consortium
18
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
vcf
assay_title!
total RNA-seq
month_released!
November, 2018
BIOSAMPLE
ASSAY
980 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
single cell RNA-seq
FAIRE-seq
tissue
liver
118
1
islet of Langerhans
30
1
38
6
1
body of pancreas
35
2
4
2
heart left ventricle
34
3
2
2
kidney
27
13
1
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