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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1780
ChIP-seq
total RNA-seq
455
ATAC-seq
304
single cell RNA-seq
98
DNase-seq
85
RNA microarray
77
snATAC-seq
74
WGBS
54
pCHi-C
27
Hi-C
15
small RNA-seq
12
RRBS
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
12
DNA methylation
Date released
10
July, 2019
2
August, 2017
Available data
12
bed bedMethyl
12
bigBed bedMethyl
2
fastq
Organism
12
Homo sapiens
Biosample type
6
primary cell
6
tissue
Organ
6
epithelium
musculature of body
kidney
2
brain
2
heart
2
liver
2
pancreas
1
connective tissue
1
eye
1
pericardium
1
vasculature
Project
12
AMP
Genome assembly (visualization)
12
hg19
Lab
12
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
vcf
assay_title!
total RNA-seq
organ_slims!
musculature of body
kidney
BIOSAMPLE
ASSAY
12 results
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RRBS
primary cell
cardiac fibroblast
1
cardiac muscle cell
1
choroid plexus epithelial cell
1
hepatocyte
1
retinal pigment epithelial cell
1
+ See 1 more…
tissue
brain
1
heart left ventricle
1
islet of Langerhans
1
liver
1
pancreas
1
+ See 1 more…
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