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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1527
total RNA-seq
531
ATAC-seq
369
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
75
DNA methylation
5
DNA accessibility
Date released
41
May, 2022
14
July, 2019
10
August, 2017
8
November, 2018
6
February, 2021
4
August, 2021
1
October, 2019
Available data
41
zippedFastqFolder
23
bam
22
bigWig
19
fastq
17
bed bedMethyl
17
bigBed bedMethyl
6
tsv
5
bed narrowPeak
5
bigBed narrowPeak
2
bed bed3+
1
tar
Organism
84
Homo sapiens
Biosample type
48
primary cell
31
tissue
3
cell line
2
in vitro differentiated cells
Organ
55
pancreas
50
epithelium
8
connective tissue
8
heart
6
adipose tissue
5
liver
3
blood vessel
3
vasculature
2
spleen
1
brain
1
kidney
1
limb
1
musculature of body
1
vein
Project
47
HPAP
37
AMP
Genome assembly (visualization)
17
GRCh38
7
hg19
Lab
47
Klaus Kaestner, Upenn
35
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
files.file_type!
vcf
BIOSAMPLE
ASSAY
84 results
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WGBS
FAIRE-seq
Capture-C
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
endothelial cell of umbilical vein
1
tissue
heart left ventricle
4
adipose tissue
3
liver
3
pancreas
2
1
subcutaneous abdominal adipose tissue
3
+ See 11 more…
cell line
EndoC_BH1
2
HepG2
1
in vitro differentiated cells
adipocyte
1
osteoblast
1
See all biosamples
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