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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
75
DNA methylation
Date released
90
February, 2021
41
May, 2022
12
July, 2019
9
August, 2017
7
November, 2018
2
December, 2019
1
August, 2021
Available data
84
txt
41
zippedFastqFolder
18
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
17
fastq
8
tsv
Organism
161
Homo sapiens
Biosample type
114
tissue
47
primary cell
1
cell line
Organ
84
bone element
51
pancreas
48
epithelium
8
heart
7
adipose tissue
7
connective tissue
5
liver
2
blood vessel
2
kidney
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
115
AMP
47
HPAP
Genome assembly (visualization)
17
GRCh38
Lab
115
AMP-T2D consortium
47
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
2
audit script error
files.file_type!
vcf
BIOSAMPLE
ASSAY
162 results
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RNA microarray
WGBS
tissue
bone element
84
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
+ See 12 more…
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
cell line
HepG2
1
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