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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
Assay category
25
DNA binding
Target of assay
16
histone
16
histone modification
15
transcription factor
11
chromatin remodeller
8
broad histone mark
8
narrow histone mark
RNA binding protein
1
recombinant protein
Date released
14
November, 2017
6
August, 2017
4
November, 2018
1
October, 2018
Available data
50
bam
50
bigWig
50
fastq
48
bed narrowPeak
25
bigBed narrowPeak
11
bed broadPeak
11
bigBed broadPeak
11
tagAlign
10
bed bed3+
Organism
25
Homo sapiens
Biosample type
18
cell line
6
tissue
1
primary cell
Organ
19
liver
5
pancreas
Project
25
AMP
Genome assembly (visualization)
25
hg19
24
GRCh38
Lab
25
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
25
inconsistent control read length
6
inconsistent control run_type
3
inconsistent assembly
files.file_type!
vcf
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
25 results
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ChIP-seq
cell line
HepG2
18
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
skeletal muscle myoblast
1
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