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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
39
ATAC-seq
21
snATAC-seq
5
Hi-C
Assay category
60
DNA accessibility
52
Transcription
DNA methylation
5
3D chromatin structure
Date released
93
May, 2022
19
September, 2020
4
July, 2019
1
October, 2019
Available data
3374
bam
3152
bigWig
1817
bed narrowPeak
1594
tsv
1337
fastq
1042
bigBed narrowPeak
398
tagAlign
322
bed broadPeak
285
bigBed broadPeak
273
bed bed3+
161
txt
112
zippedFastqFolder
64
xls
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
vcf
Organism
117
Homo sapiens
Biosample type
116
primary cell
1
cell line
Organ
41
epithelium
40
pancreas
3
brain
2
blood vessel
2
vasculature
1
connective tissue
1
liver
Project
112
HPAP
5
AMP
Genome assembly (visualization)
5
hg19
1
GRCh38
Lab
112
Klaus Kaestner, Upenn
5
AMP-T2D consortium
Audit category:
1
inconsistent assembly
files.file_type!
vcf
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
117 results
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single cell RNA-seq
ATAC-seq
snATAC-seq
Hi-C
primary cell
Langerhans cell
52
21
pancreatic alpha cell
22
pancreatic beta cell
13
pancreatic acinar cell
4
astrocyte of the cerebellum
1
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cell line
Panc1
1
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