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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
ATAC-seq
3
Hi-C
2
Capture-C
Assay category
5
DNA accessibility
3
3D chromatin structure
Date released
4
August, 2021
3
February, 2023
3
October, 2022
Available data
5
bigWig
4
bed narrowPeak
3
bed bedgraph
3
bedpe bed3+
3
cool
3
hic
3
txt
2
bed bed3+
Organism
10
Homo sapiens
Biosample type
7
in vitro differentiated cells
3
primary cell
Organ
4
connective tissue
3
epithelium
3
pancreas
Project
7
AMP
3
HPAP
Genome assembly (visualization)
10
GRCh38
10
hg19
Lab
2925
AMP-T2D consortium
238
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
3
Klaus Kaestner, Upenn
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
3
audit script error
1
inconsistent ontology term
files.file_type!
vcf
BIOSAMPLE
ASSAY
10 results
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ATAC-seq
Hi-C
Capture-C
in vitro differentiated cells
adipocyte
1
1
osteoblast
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
primary cell
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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