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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
Transcription
4
DNA accessibility
Date released
84
February, 2021
3
February, 2023
1
May, 2022
1
October, 2022
Available data
1793
bam
1675
bed narrowPeak
1584
bigWig
1000
bigBed narrowPeak
789
fastq
313
tagAlign
281
bed broadPeak
270
bigBed broadPeak
238
bed bed3+
101
zippedFastqFolder
89
txt
64
xls
56
tsv
30
bed bedMethyl
30
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
vcf
Organism
88
Homo sapiens
Biosample type
85
tissue
3
in vitro differentiated cells
1
cell line
Organ
84
bone element
1
musculature of body
Project
89
AMP
Genome assembly (visualization)
4
hg19
Lab
86
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
1
audit script error
files.file_type!
vcf
month_released!
August, 2017
assay_slims!
Transcription
BIOSAMPLE
ASSAY
89 results
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RNA microarray
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
skeletal muscle tissue
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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