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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
total RNA-seq
73
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
pCHi-C
1
RNA microarray
Assay category
399
Transcription
73
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
12
July, 2019
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
442
bam
425
bigWig
398
tsv
43
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
486
Homo sapiens
Biosample type
485
tissue
2
primary cell
Organ
944
pancreas
786
liver
677
connective tissue
524
epithelium
487
adipose tissue
387
heart
352
kidney
272
brain
232
vasculature
226
blood vessel
158
bone element
139
artery
119
limb
93
musculature of body
69
blood
69
bodily fluid
56
eye
42
nerve
37
embryo
24
spleen
22
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
Project
487
AMP
Genome assembly (visualization)
426
hg19
424
GRCh38
Lab
487
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
vcf
month_released!
February, 2020
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
487 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
tissue
adipose tissue
382
2
3
3
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
6
12
1
1
1
omental fat pad
4
11
1
1
2
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
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