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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
933
total RNA-seq
729
ChIP-seq
256
ATAC-seq
180
single cell RNA-seq
176
DNase-seq
87
RNA microarray
28
snATAC-seq
18
WGBS
16
small RNA-seq
9
Hi-C
6
RRBS
5
pCHi-C
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
1129
Transcription
729
DNA binding
463
DNA accessibility
24
DNA methylation
9
3D chromatin structure
Target of assay
502
histone
502
histone modification
272
narrow histone mark
230
broad histone mark
158
control
71
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1728
bam
1583
bigWig
959
tsv
916
bed narrowPeak
539
bigBed narrowPeak
202
fastq
187
bed broadPeak
179
bed bed3+
179
tagAlign
176
bigBed broadPeak
157
txt
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
6
csv
5
bed bed3
4
hic
3
bedpe bed3+
1
bedpe
1
tagAlign bed3+
Organism
2451
Homo sapiens
Biosample type
2453
tissue
1028
primary cell
650
cell line
318
in vitro differentiated cells
6
stem cell
Organ
489
connective tissue
430
adipose tissue
349
pancreas
306
heart
304
liver
299
kidney
263
brain
158
bone element
130
blood vessel
130
vasculature
122
limb
73
artery
56
eye
51
musculature of body
43
nerve
24
spleen
19
lung
18
ureter
16
skeleton
15
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
1
thymus
Project
2360
AMP
47
KPMP
27
T1D
19
LungMap
Genome assembly (visualization)
1692
GRCh38
1557
hg19
Lab
2101
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
4
missing controlled_by
Audit category:
1
inconsistent control read length
files.file_type!
vcf
month_released!
March, 2020
August, 2017
BIOSAMPLE
ASSAY
2453 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
MeRIP-seq
FAIRE-seq
snDrop-seq
tissue
adipose tissue
382
3
islet of Langerhans
201
27
66
6
7
3
1
4
4
liver
166
97
20
1
2
1
kidney
49
27
75
64
13
6
1
1
1
bone element
84
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