Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
180
total RNA-seq
165
ChIP-seq
34
ATAC-seq
17
pCHi-C
10
snATAC-seq
9
single cell RNA-seq
1
DNAme array
Assay category
189
Transcription
165
DNA binding
44
DNA accessibility
1
DNA methylation
Target of assay
140
histone
140
histone modification
76
broad histone mark
64
narrow histone mark
16
transcription factor
9
control
5
RNA binding protein
Date released
713
February, 2021
406
November, 2017
397
May, 2021
378
August, 2017
341
May, 2020
313
August, 2021
306
October, 2019
201
February, 2023
199
May, 2022
168
July, 2018
120
May, 2019
104
July, 2019
80
April, 2019
79
December, 2017
79
November, 2018
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
June, 2019
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
15
November, 2020
10
December, 2019
9
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
303
bigWig
277
bam
173
tsv
133
bed narrowPeak
90
tagAlign
bed bed3+
Organism
415
Homo sapiens
Biosample type
204
primary cell
132
in vitro differentiated cells
59
tissue
21
cell line
Organ
61
pancreas
26
epithelium
19
lung
3
heart
2
connective tissue
2
embryo
1
bone element
1
bone marrow
1
thymus
Project
244
AMP
153
T1D
19
LungMap
Genome assembly (visualization)
314
hg19
276
GRCh38
Lab
233
Kyle Gaulton, UCSD
164
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
90
inconsistent ontology term
files.file_type!
vcf
bed bed3+
BIOSAMPLE
ASSAY
416 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
snATAC-seq
single cell RNA-seq
DNAme array
primary cell
monocyte
52
85
13
1
1
CD8-positive, alpha-beta T cell
33
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
1
CD4-positive, alpha-beta T cell
2
neutrophil
1
1
+ See 11 more…
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiac fibroblast
1
+ See 10 more…
tissue
islet of Langerhans
36
lung
10
9
cardiac atrium
1
cardiac ventricle
1
pancreas
1
+ See 1 more…
cell line
EndoC_BH1
4
1
16
See all biosamples
Download