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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
143
ChIP-seq
6
WGBS
4
ATAC-seq
1
DNase-seq
Assay category
143
DNA binding
6
DNA methylation
5
DNA accessibility
Target of assay
83
histone
83
histone modification
46
broad histone mark
36
narrow histone mark
34
transcription factor
26
control
4
RNA binding protein
2
chromatin remodeller
Date released
487
February, 2021
154
August, 2017
80
May, 2022
66
February, 2023
61
September, 2018
39
October, 2019
38
June, 2019
35
April, 2018
35
July, 2018
31
July, 2019
28
May, 2021
25
October, 2018
19
December, 2017
19
September, 2020
17
November, 2019
12
November, 2020
11
August, 2021
8
March, 2020
7
August, 2020
6
December, 2019
6
November, 2017
5
May, 2019
5
September, 2017
4
August, 2018
3
October, 2022
2
February, 2020
1
January, 2018
1
June, 2018
1
May, 2023
1
November, 2018
1
October, 2017
Available data
101
fastq
100
bam
82
bigWig
63
bed narrowPeak
22
tagAlign
11
bed bed3+
6
bigBed narrowPeak
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
1
bigBed broadPeak
Organism
154
Homo sapiens
Biosample type
68
in vitro differentiated cells
57
tissue
29
primary cell
Organ
188
pancreas
125
connective tissue
57
adipose tissue
54
liver
29
epithelium
26
musculature of body
Project
154
AMP
Genome assembly (visualization)
82
GRCh38
81
hg19
Lab
154
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
10
inconsistent control read length
files.file_type!
vcf
BIOSAMPLE
ASSAY
154 results
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Clear Filters
ChIP-seq
WGBS
ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
67
1
tissue
subcutaneous abdominal adipose tissue
36
3
white adipose tissue
12
adipose tissue
2
3
subcutaneous adipose tissue
1
primary cell
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic acinar cell
1
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