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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
total RNA-seq
72
ChIP-seq
3
ATAC-seq
1
DNase-seq
1
FAIRE-seq
Assay category
89
Transcription
72
DNA binding
5
DNA accessibility
Target of assay
50
histone
50
histone modification
27
broad histone mark
23
narrow histone mark
21
control
1
RNA binding protein
1
transcription factor
Date released
166
August, 2017
157
July, 2018
104
May, 2022
61
May, 2021
56
February, 2023
55
November, 2019
53
October, 2018
40
September, 2018
39
April, 2018
32
February, 2021
19
September, 2020
18
October, 2019
14
March, 2020
11
September, 2017
10
November, 2020
8
January, 2021
7
August, 2020
7
November, 2018
6
July, 2019
5
March, 2019
5
October, 2017
4
August, 2021
4
June, 2019
3
August, 2018
3
October, 2022
2
May, 2019
1
August, 2022
1
February, 2020
1
June, 2018
Available data
146
bam
146
fastq
137
bigWig
89
tsv
48
bed narrowPeak
17
bigBed narrowPeak
16
tagAlign
12
bed broadPeak
9
bed bed3+
Organism
159
Homo sapiens
Biosample type
137
tissue
29
primary cell
Organ
166
pancreas
108
connective tissue
54
liver
45
adipose tissue
29
epithelium
26
musculature of body
Project
166
AMP
Genome assembly (visualization)
137
hg19
130
GRCh38
Lab
166
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
8
inconsistent control read length
1
inconsistent assembly
files.file_type!
vcf
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
166 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
89
32
1
1
pancreas
14
primary cell
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic acinar cell
1
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