Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
214
ChIP-seq
Assay category
214
DNA binding
193
Transcription
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
Target of assay
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
74
November, 2017
50
May, 2020
44
August, 2017
30
December, 2017
11
August, 2021
5
October, 2019
Available data
184
bam
125
fastq
99
bigWig
86
tagAlign
84
bed narrowPeak
38
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
4
bed bed3+
Organism
214
Homo sapiens
Biosample type
116
tissue
81
cell line
13
in vitro differentiated cells
4
primary cell
Organ
215
brain
214
liver
199
pancreas
120
epithelium
117
heart
113
connective tissue
93
vasculature
91
blood vessel
66
limb
56
adipose tissue
42
kidney
39
musculature of body
35
nerve
29
artery
19
embryo
17
vein
14
spleen
9
blood
9
bodily fluid
4
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
214
AMP
Genome assembly (visualization)
100
hg19
74
GRCh38
Lab
207
AMP-T2D consortium
7
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
12
inconsistent control read length
files.file_type!
vcf
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
214 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
tissue
liver
108
right lobe of liver
8
cell line
HepG2
81
in vitro differentiated cells
hepatocyte
13
primary cell
hepatocyte
4
Download