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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
47
ATAC-seq
30
DNase-seq
8
WGBS
3
Hi-C
2
RRBS
1
single cell RNA-seq
Assay category
117
DNA binding
77
DNA accessibility
10
DNA methylation
3
3D chromatin structure
1
Transcription
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
20
control
transcription factor
11
RNA binding protein
Date released
52
April, 2019
36
February, 2023
35
May, 2024
34
June, 2019
19
May, 2019
14
July, 2019
10
February, 2021
6
October, 2019
2
March, 2020
Available data
207
bigWig
199
bam
174
bed narrowPeak
tsv
86
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
2
tagAlign
Organism
208
Homo sapiens
Biosample type
190
tissue
10
cell line
8
primary cell
Organ
510
pancreas
359
epithelium
320
kidney
278
liver
257
brain
208
heart
166
connective tissue
159
vasculature
154
blood vessel
115
limb
101
bone element
87
musculature of body
78
artery
73
adipose tissue
55
eye
38
nerve
22
vein
20
embryo
19
lung
18
blood
18
bodily fluid
18
spleen
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
208
AMP
Genome assembly (visualization)
179
GRCh38
106
hg19
Lab
173
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
Audit category:
5
inconsistent ontology term
files.file_type!
vcf
tsv
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
208 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
RRBS
single cell RNA-seq
tissue
coronary artery
4
36
2
heart left ventricle
30
2
3
4
1
1
left cardiac atrium
35
1
heart
14
18
1
1
1
heart right ventricle
13
1
2
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
2
8
primary cell
cardiac fibroblast
4
3
1
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