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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
ChIP-seq
Assay category
10
DNA binding
Target of assay
626
histone modification
625
histone
365
narrow histone mark
343
control
259
broad histone mark
109
transcription factor
21
RNA binding protein
8
recombinant protein
5
nucleotide modification
2
chromatin remodeller
Date released
7
October, 2019
2
August, 2017
1
November, 2018
Available data
125
bam
124
bed narrowPeak
124
bigWig
118
fastq
bigBed narrowPeak
5
bed broadPeak
5
bigBed broadPeak
Organism
10
Homo sapiens
Biosample type
8
cell line
2
in vitro differentiated cells
Organ
7
kidney
2
connective tissue
1
liver
Project
10
AMP
Genome assembly (visualization)
9
GRCh38
9
hg19
Lab
10
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
vcf
bigBed narrowPeak
BIOSAMPLE
ASSAY
10 results
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ChIP-seq
cell line
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
HepG2
1
in vitro differentiated cells
adipocyte
2
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