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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
ATAC-seq
56
snATAC-seq
29
DNase-seq
1
FAIRE-seq
Assay category
436
Transcription
283
DNA accessibility
226
DNA binding
57
DNA methylation
10
3D chromatin structure
Date released
100
May, 2020
60
May, 2022
28
February, 2021
24
June, 2019
14
September, 2018
13
May, 2021
12
February, 2023
8
January, 2021
7
August, 2020
7
October, 2019
August, 2017
5
September, 2017
3
September, 2020
2
November, 2020
Available data
109
bam
103
bigWig
64
bed narrowPeak
60
zippedFastqFolder
56
fastq
47
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
12
tsv
1
bed bed3
1
tar
Organism
283
Homo sapiens
Biosample type
401
tissue
283
primary cell
42
in vitro differentiated cells
31
cell line
Organ
88
epithelium
68
pancreas
12
kidney
8
blood
8
bodily fluid
8
connective tissue
7
vasculature
5
blood vessel
5
brain
3
heart
3
liver
3
vein
1
eye
1
musculature of body
Project
178
AMP
97
HPAP
8
T1D
Genome assembly (visualization)
102
hg19
73
GRCh38
Lab
178
AMP-T2D consortium
97
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
Audit category:
27
audit script error
15
inconsistent ontology term
files.file_type!
xls
month_released!
August, 2017
BIOSAMPLE
ASSAY
283 results
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ATAC-seq
snATAC-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
48
pancreatic alpha cell
34
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
pancreatic beta cell
22
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