Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1046
total RNA-seq
797
ChIP-seq
204
DNase-seq
143
ATAC-seq
106
single cell RNA-seq
18
small RNA-seq
16
WGBS
1
Hi-C
Assay category
1170
Transcription
797
DNA binding
347
DNA accessibility
16
DNA methylation
1
3D chromatin structure
Target of assay
692
histone modification
691
histone
353
narrow histone mark
338
broad histone mark
102
transcription factor
36
RNA binding protein
6
control
3
chromatin remodeller
3
other context
3
other post-translational modification
Date released
454
February, 2021
210
June, 2019
207
May, 2020
200
August, 2017
187
May, 2021
183
October, 2019
164
July, 2018
96
May, 2019
79
July, 2019
72
September, 2018
64
April, 2019
63
November, 2017
49
April, 2018
47
October, 2018
40
May, 2024
39
November, 2019
36
December, 2017
35
February, 2023
22
November, 2018
14
October, 2017
12
May, 2023
9
March, 2020
7
August, 2020
7
September, 2017
6
January, 2019
6
November, 2020
5
December, 2019
3
August, 2018
3
August, 2021
3
December, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
2231
bigWig
2228
bam
1169
tsv
1144
bed narrowPeak
660
bigBed narrowPeak
509
fastq
236
bed broadPeak
234
bed bed3+
221
bigBed broadPeak
214
tagAlign
xls
16
bed bedMethyl
16
bigBed bedMethyl
1
bed bed3
1
hic
1
tagAlign bed3+
Organism
2325
Homo sapiens
Biosample type
1795
tissue
536
primary cell
464
cell line
265
in vitro differentiated cells
3
stem cell
Organ
578
pancreas
512
connective tissue
424
adipose tissue
249
liver
225
epithelium
217
brain
201
heart
129
kidney
127
vasculature
123
blood vessel
96
limb
66
bone element
64
artery
53
musculature of body
31
nerve
18
ureter
16
spleen
12
vein
8
skeleton
6
eye
1
pericardium
1
pituitary gland
Project
2138
AMP
182
T1D
10
HPAP
1
ITG
Genome assembly (visualization)
2378
hg19
2331
GRCh38
Lab
2086
AMP-T2D consortium
180
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
11
Katalin Susztak, Upenn
10
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
ITG
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
40
inconsistent ontology term
27
inconsistent control
Audit category:
69
missing controlled_by
Audit category:
11
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
files.file_type!
xls
assay_title!
FAIRE-seq
BIOSAMPLE
ASSAY
2331 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue
382
1
2
islet of Langerhans
260
25
1
22
6
liver
147
75
2
1
bone tissue
58
kidney
20
13
11
+ See 142 more…
primary cell
monocyte
53
84
13
pancreatic alpha cell
10
7
13
12
pancreatic beta cell
10
7
10
12
pancreatic ductal cell
4
13
4
10
pancreatic acinar cell
4
8
5
12
+ See 75 more…
See all biosamples
Download