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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
208
ChIP-seq
191
total RNA-seq
149
ATAC-seq
76
single cell RNA-seq
49
WGBS
25
DNase-seq
9
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
1
pCHi-C
Assay category
25
DNA accessibility
Date released
18
June, 2019
7
October, 2019
Available data
23
bam
23
bed narrowPeak
23
bigBed narrowPeak
23
bigWig
22
bed bed3+
22
bed broadPeak
22
bigBed broadPeak
Organism
25
Homo sapiens
Biosample type
19
primary cell
5
tissue
1
cell line
Organ
81
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
25
AMP
Genome assembly (visualization)
23
GRCh38
17
hg19
Lab
25
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
xls
BIOSAMPLE
ASSAY
25 results
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DNase-seq
primary cell
kidney tubule cell
3
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
brain microvascular endothelial cell
1
+ See 9 more…
tissue
coronary artery
2
tibial artery
2
ascending aorta
1
cell line
glomerular visceral epithelial cell
1
See all biosamples
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