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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
41
WGBS
39
ATAC-seq
21
snATAC-seq
3
ChIP-seq
1
FAIRE-seq
Assay category
61
DNA accessibility
52
Transcription
41
DNA methylation
3
DNA binding
Target of assay
3
transcription factor
1
RNA binding protein
Date released
134
May, 2022
19
September, 2020
3
November, 2017
1
October, 2019
Available data
433
bam
407
fastq
239
bigWig
200
tsv
185
bed narrowPeak
161
txt
153
zippedFastqFolder
152
tagAlign
44
bigBed narrowPeak
40
bed broadPeak
23
bedpe bed3+
22
hic
19
bed bedMethyl
19
bigBed bedMethyl
18
bigBed broadPeak
15
bed bed3+
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
vcf
Organism
157
Homo sapiens
Biosample type
154
primary cell
3
cell line
Organ
81
epithelium
80
pancreas
3
liver
1
blood vessel
1
vasculature
1
vein
Project
153
HPAP
4
AMP
Genome assembly (visualization)
4
hg19
Lab
153
Klaus Kaestner, Upenn
4
AMP-T2D consortium
files.file_type!
xls
assembly!
GRCh38
BIOSAMPLE
ASSAY
157 results
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single cell RNA-seq
WGBS
ATAC-seq
snATAC-seq
ChIP-seq
FAIRE-seq
primary cell
Langerhans cell
52
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
endothelial cell of umbilical vein
1
cell line
HepG2
3
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