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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
Hi-C
Assay category
1794
DNA binding
1769
Transcription
721
DNA accessibility
95
DNA methylation
26
3D chromatin structure
Date released
8
July, 2019
8
March, 2020
3
October, 2019
3
October, 2022
1
August, 2021
1
December, 2018
1
March, 2023
1
November, 2019
Available data
16
hic
13
bedpe bed3+
5
bed bed3+
5
bigWig
5
hdf5
3
cool
1
fastq
Organism
26
Homo sapiens
Biosample type
14
tissue
10
primary cell
2
cell line
Organ
7
epithelium
6
musculature of body
6
pancreas
5
blood vessel
5
vasculature
4
limb
3
brain
3
heart
3
liver
2
vein
1
connective tissue
1
kidney
Project
22
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
20
hg19
2
GRCh38
Lab
21
AMP-T2D consortium
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
ITG
1
Katalin Susztak, Upenn
Audit category:
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent assembly
files.file_type!
xls
audit.ERROR.category!
inconsistent ontology term
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
26 results
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Hi-C
tissue
gastrocnemius medialis
4
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 5 more…
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
chondrocytes
1
+ See 4 more…
cell line
HepG2
1
Panc1
1
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