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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
Hi-C
Assay category
1756
Transcription
1596
DNA binding
685
DNA accessibility
93
DNA methylation
26
3D chromatin structure
1
DNA sequencing
Date released
8
March, 2020
5
July, 2019
3
August, 2021
3
October, 2019
3
October, 2022
1
December, 2018
1
March, 2019
1
March, 2023
1
November, 2019
Available data
18
hic
15
bedpe bed3+
3
cool
2
bed bed3+
2
bigWig
2
hdf5
1
bedpe
1
fastq
Organism
26
Homo sapiens
Biosample type
16
tissue
7
primary cell
3
cell line
Organ
8
pancreas
7
epithelium
6
musculature of body
5
blood vessel
5
vasculature
4
limb
4
liver
brain
3
heart
2
vein
1
connective tissue
1
kidney
Project
22
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
19
hg19
2
GRCh38
Lab
18
AMP-T2D consortium
3
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
ITG
1
Katalin Susztak, Upenn
Audit category:
inconsistent ontology term
4
audit script error
Audit category:
1
inconsistent assembly
files.file_type!
xls
audit.ERROR.category!
inconsistent ontology term
organ_slims!
brain
BIOSAMPLE
ASSAY
26 results
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Hi-C
tissue
gastrocnemius medialis
4
islet of Langerhans
3
psoas muscle
2
aorta
1
heart
1
+ See 5 more…
primary cell
endothelial cell of umbilical vein
2
chondrocytes
1
endothelial cell of hepatic sinusoid
1
pancreatic acinar cell
1
pancreatic alpha cell
1
+ See 1 more…
cell line
HepG2
2
Panc1
1
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