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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
total RNA-seq
18
small RNA-seq
13
ATAC-seq
13
RRBS
12
WGBS
8
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
65
Transcription
25
DNA methylation
15
DNA accessibility
8
3D chromatin structure
Target of assay
3
control
Date released
587
February, 2021
411
August, 2017
406
November, 2017
333
May, 2020
309
May, 2021
291
October, 2019
252
August, 2021
200
May, 2022
194
February, 2023
192
June, 2019
162
July, 2018
117
May, 2019
106
July, 2019
90
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
59
September, 2020
49
April, 2018
47
March, 2020
47
September, 2023
39
February, 2018
39
November, 2019
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
2
June, 2018
1
August, 2022
Available data
92
bigWig
82
bam
65
tsv
21
bed bedMethyl
21
bigBed bedMethyl
7
bed narrowPeak
7
fastq
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
113
Homo sapiens
Biosample type
77
tissue
36
primary cell
Organ
24
heart
19
epithelium
18
brain
17
connective tissue
13
pancreas
12
adipose tissue
12
vasculature
11
blood vessel
10
kidney
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
106
AMP
7
HPAP
Genome assembly (visualization)
89
hg19
86
GRCh38
Lab
106
AMP-T2D consortium
7
Klaus Kaestner, Upenn
Audit category:
inconsistent ontology term
files.file_type!
xls
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
113 results
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total RNA-seq
small RNA-seq
ATAC-seq
RRBS
WGBS
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
2
1
4
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 26 more…
primary cell
pancreatic alpha cell
5
cerebellar granule cell
2
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
pancreatic beta cell
2
+ See 21 more…
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