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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
834
ChIP-seq
634
total RNA-seq
190
ATAC-seq
180
single cell RNA-seq
176
DNase-seq
86
RNA microarray
28
snATAC-seq
24
pCHi-C
21
WGBS
14
small RNA-seq
11
RRBS
6
Hi-C
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
834
DNA binding
828
Transcription
398
DNA accessibility
32
DNA methylation
6
3D chromatin structure
Target of assay
596
histone modification
595
histone
312
narrow histone mark
283
broad histone mark
163
control
77
transcription factor
23
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
240
October, 2019
227
August, 2017
193
May, 2020
163
August, 2021
162
June, 2019
159
February, 2021
120
July, 2018
115
May, 2019
94
February, 2023
82
November, 2017
80
April, 2019
67
July, 2019
66
May, 2022
51
October, 2018
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
38
November, 2019
32
March, 2020
25
November, 2018
23
February, 2020
22
October, 2017
19
April, 2020
14
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2022
1
January, 2018
Available data
1467
bam
1349
bigWig
971
bed narrowPeak
677
tsv
551
bigBed narrowPeak
334
fastq
230
tagAlign
210
bed broadPeak
199
bed bed3+
174
bigBed broadPeak
157
txt
xls
23
bed bedMethyl
23
bigBed bedMethyl
11
hic
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2207
Homo sapiens
Biosample type
2215
tissue
1082
primary cell
660
cell line
387
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
502
pancreas
adipose tissue
360
liver
310
heart
265
brain
235
kidney
158
bone element
132
blood vessel
132
vasculature
122
limb
80
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2118
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1373
GRCh38
1322
hg19
Lab
1928
AMP-T2D consortium
78
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
14
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
files.file_type!
xls
bedpe bed3+
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
2215 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
snATAC-seq
pCHi-C
WGBS
small RNA-seq
RRBS
Hi-C
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
71
292
68
6
1
7
4
1
1
1
4
liver
145
167
20
1
2
1
3
1
1
kidney
27
49
11
64
13
6
1
1
1
bone element
84
heart left ventricle
35
3
2
18
3
1
4
1
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