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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
29
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
49
DNA accessibility
29
DNA binding
Target of assay
18
histone
18
histone modification
14
broad histone mark
7
control
4
narrow histone mark
4
transcription factor
Date released
66
February, 2021
35
February, 2023
26
October, 2019
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
97
bam
82
bigWig
71
bed narrowPeak
58
tsv
22
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
136
Homo sapiens
Biosample type
68
tissue
66
cell line
2
primary cell
Organ
938
pancreas
788
liver
681
connective tissue
513
epithelium
489
adipose tissue
364
heart
281
kidney
256
brain
184
vasculature
179
blood vessel
159
bone element
136
artery
114
limb
85
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
136
AMP
Genome assembly (visualization)
125
GRCh38
90
hg19
Lab
136
AMP-T2D consortium
files.file_type!
xls
bigBed bedMethyl
month_released!
May, 2019
BIOSAMPLE
ASSAY
136 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
1
36
2
tibial artery
1
1
23
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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