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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
119
ATAC-seq
12
ChIP-seq
1
Hi-C
1
total RNA-seq
Assay category
119
DNA accessibility
12
DNA binding
1
3D chromatin structure
1
Transcription
Target of assay
9
control
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
35
February, 2023
26
November, 2019
17
February, 2021
13
May, 2021
12
May, 2023
10
August, 2021
6
October, 2019
5
December, 2017
2
August, 2017
2
March, 2019
2
September, 2017
1
March, 2023
1
November, 2017
1
November, 2020
Available data
2959
bam
bigWig
1592
bed narrowPeak
1400
tsv
998
bigBed narrowPeak
951
fastq
282
bed broadPeak
267
bigBed broadPeak
258
bed bed3+
246
tagAlign
xls
17
bed bedMethyl
17
bigBed bedMethyl
2
bed bed3
1
hdf5
1
hic
1
tagAlign bed3+
Organism
133
Homo sapiens
Biosample type
83
tissue
22
in vitro differentiated cells
17
primary cell
10
cell line
1
stem cell
Organ
43
artery
43
blood vessel
43
heart
43
vasculature
24
pancreas
11
kidney
8
bone element
8
skeleton
6
limb
4
connective tissue
3
brain
3
liver
2
adipose tissue
2
epithelium
1
embryo
Project
132
AMP
1
ITG
Genome assembly (visualization)
197
hg19
133
GRCh38
Lab
119
AMP-T2D consortium
11
Katalin Susztak, Upenn
1
Bing Ren, UCSD
1
ITG
1
Mark McCarthy, Oxford
Audit category:
11
inconsistent ontology term
1
inconsistent replicate
files.file_type!
xls
bigWig
BIOSAMPLE
ASSAY
133 results
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Clear Filters
ATAC-seq
ChIP-seq
Hi-C
total RNA-seq
tissue
coronary artery
35
islet of Langerhans
21
2
kidney
11
adipose tissue
1
adipose tissue(adipose white tissue)
1
+ See 12 more…
in vitro differentiated cells
neural progenitor cell
10
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
Posterior foregut
1
adipocyte
1
cardiac precursors (cardiac muscle cell)
1
+ See 4 more…
primary cell
monocyte
13
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
chondrocytes
1
osteoblast
1
cell line
smooth muscle cell of the coronary artery
8
EndoC_BH1
1
HepG2
1
stem cell
hESC
1
See all biosamples
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