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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
22
ATAC-seq
20
total RNA-seq
3
DNase-seq
3
Hi-C
3
WGBS
2
STARR-seq
1
RRBS
1
pCHi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
100
DNA binding
25
DNA accessibility
21
Transcription
4
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
58
histone
58
histone modification
41
narrow histone mark
31
control
17
broad histone mark
11
transcription factor
1
RNA binding protein
Date released
50
May, 2020
40
May, 2022
26
August, 2017
26
August, 2021
6
October, 2019
3
February, 2021
3
July, 2019
2
June, 2019
1
March, 2020
Available data
681
bam
622
bigWig
fastq
441
bed narrowPeak
358
bigBed narrowPeak
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
157
Homo sapiens
Biosample type
124
tissue
24
cell line
9
primary cell
Organ
266
kidney
258
pancreas
239
brain
225
heart
211
epithelium
162
vasculature
159
blood vessel
157
liver
115
limb
108
connective tissue
101
bone element
85
musculature of body
83
artery
56
eye
46
adipose tissue
38
nerve
22
vein
19
lung
18
ureter
16
skeleton
9
blood
9
bodily fluid
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
157
AMP
Genome assembly (visualization)
78
hg19
31
GRCh38
Lab
95
AMP-T2D consortium
40
Karen Mohlke, UNC
22
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
files.file_type!
xls
tsv
fastq
BIOSAMPLE
ASSAY
157 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
Hi-C
WGBS
STARR-seq
RRBS
pCHi-C
single cell RNA-seq
whole genome sequencing assay
tissue
liver
78
20
20
1
2
1
right lobe of liver
1
1
cell line
HepG2
18
1
1
2
1
1
primary cell
hepatocyte
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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